chr4:122633552:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr4:123,554,707-123,554,707 View the variant detail on this assembly version. |
| hg38 | chr4:122,633,552-122,633,552 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.133 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.002 | prostate carcinoma | We genotyped six variants previously associated with autoimmune disease (namely ... | BeFree | 20184734 | Detail |
| 0.007 | Malignant neoplasm of prostate | We genotyped six variants previously associated with autoimmune disease (namely ... | BeFree | 20184734 | Detail |
| 0.017 | Autoimmune Diseases | We genotyped six variants previously associated with autoimmune disease (namely ... | BeFree | 20184734 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| We genotyped six variants previously associated with autoimmune disease (namely rs13151961, rs131197... | DisGeNET | Detail |
| We genotyped six variants previously associated with autoimmune disease (namely rs13151961, rs131197... | DisGeNET | Detail |
| We genotyped six variants previously associated with autoimmune disease (namely rs13151961, rs131197... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs6840978 dbSNP
- Genome
- hg38
- Position
- chr4:122,633,552-122,633,552
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs6840978
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1328
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2225
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
Genome browser